Generic function ALIGN-TO-CONSENSUS

Package:

CLARITY

Syntax:

  align-to-consensus cl-handle timecourse-id consensus-id
  

Arguments and Values:

cl-handle---a cl-handle

timecourse-id---an integer

consensus-id---an integer

Description:

The generic function align-to-consensus aligns a timecourse dataset to a consensus of sequences. It takes three parameters, cl-handle, which preserves the session; timecourse-id which identifies the timecourse data and consensus id which is the numerical id identifying the consensus sequences (note that consensus id is interchangeable with tree id in this case) in the database. The function returns a hash table containing alignments hashed by score.

Known Methods:

•   align-to-consensus (cl-handle clarity-handle) (timecourse-id integer) (consensus-id integer)
    

Examples:

cl-prompt: (clarity:align-to-consensus cl-handle 6 8)
  

Affected By:

None.

Exceptional Situations:

None.

See Also:

SCORE-PAIR
SCORE-PAIR-CONSENSUS
ALIGN-CHARTS
STRING-ALIGNMENT

Notes:

None.

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News

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• 2006-07-26
  Completed description.