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3 <title>CLARITY: Standard Generic Function ALIGNMENT-ITEM</title>
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44 <strong><i>CLARITY: Standard Generic Function ALIGNMENT-ITEM</title></i></strong>
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61 <div class="text">
62
63 <h1><i>Standard Class</i> <strong>ALIGNMENT-ITEM</strong></h1>
64
65 <h2>Package:</h2>
66
67 <p><code>CLARITY</code></p>
68
69 <h2>Class Precedence List:</h2>
70
71 <p> alignment-item, STRUCTURE-OBJECT, T
72 </p>
73
74 <h2>Slots:</h2>
75 <ul>
76 <li>DATASET-ID accessor alignment-item-dataset-id</li>
77 <li>CHART-ID accessor alignment-item-chart-id</li>
78 <li>TERM-NAME accessor alignment-item-term-name</li>
79 <li>STRING accessor alignment-item-string</li>
80 </ul>
81 <h2>Description:</h2>
82
83 <p>The alignment-item structure is used to store information for terms about to be aligned. The dataset-id will be either
84 a timecourse dataset id or a tree node id depending on whether the the node the item belongs to is an internal (consensus) node
85 or a leaf node. Chart-id is the id of the item in the gantt_chart table. String is the gantt chart as created with the ganttify function.</p>
86
87 <p>The constructor for this class is new-alignment-item. The accessors alignment-item-dataset-id, alignment-item-chart-id
88 alignment-item-term-name and alignment-item-string can be used to read or write their respective fields.</p>
89
90
91 <h2>Affected By:</h2>
92
93 <p>None.</p>
94
95 <h2>Exceptional Situations:</h2>
96
97 <p>None.</p>
98
99 <h2>See Also:</h2>
100
101 <p><a href="alignment.html">ALIGNMENT</a><br>
102 <a href="ganttify.html">GANTTIFY</a></p>
103
104 <h2>Notes:</h2>
105
106 <p>None.</p>
107
108
109
110 <hr>
111
112
113 <h1>News</h1>
114
115 <p>News in chronological order, most recent on top.
116 </p>
117
118 <ul>
119 <li><strong>2006-07-26 </strong><br>
120 Completed description.
121 </li>
122
123 </ul>
124
125
126
127 <div class="copyright">
128 &copy; 2006, Samantha Kleinberg, all rights reserved.
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