Standard Class ALIGNMENT-ITEM

Package:

CLARITY

Class Precedence List:

alignment-item, STRUCTURE-OBJECT, T

Slots:

• DATASET-ID accessor alignment-item-dataset-id
• CHART-ID accessor alignment-item-chart-id
• TERM-NAME accessor alignment-item-term-name
• STRING accessor alignment-item-string

Description:

The alignment-item structure is used to store information for terms about to be aligned. The dataset-id will be either a timecourse dataset id or a tree node id depending on whether the the node the item belongs to is an internal (consensus) node or a leaf node. Chart-id is the id of the item in the gantt_chart table. String is the gantt chart as created with the ganttify function.

The constructor for this class is new-alignment-item. The accessors alignment-item-dataset-id, alignment-item-chart-id alignment-item-term-name and alignment-item-string can be used to read or write their respective fields.

Affected By:

None.

Exceptional Situations:

None.

See Also:

ALIGNMENT
GANTTIFY

Notes:

None.

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News

News in chronological order, most recent on top.

• 2006-07-26
  Completed description.