CL-GODB: Standard Generic Function TERM-GENE-PRODUCTS

Generic function TERM-GENE-PRODUCTS

Package:

GODB

Syntax:

  term-gene-products go-handle go-term
  => list-of-gene-product-objects
  

Arguments and Values:

go-handle---an object of type go-handle

go-term---an object of type term

Description:

The generic function term-gene-products is used to find the gene products associated with a term. It takes two parameters, go-handle, to preserve the session, and go-term to identify the term whose gene products are to be found. It returns a list of objects of type GENE PRODUCT.

Known Methods:

  •   term-gene-products (go-handle-object go-handle) (go-term-object go-term)
      => list-of-gene-product-objects
      

Affected By:

None.

Examples:

cl-prompt: (godb:term-gene-products mygohandle (godb:get-term mygohandle 203))
(#<GODB:GENE-PRODUCT 2060CBE4> #<GODB:GENE-PRODUCT 2060CBB4>)

cl-prompt: (godb:term-gene-products mygohandle (godb:get-term-by-acc mygohandle "GO:0000140"))
(#<GODB:GENE-PRODUCT 2061A574> #<GODB:GENE-PRODUCT 2061A544>) 

cl-prompt: (godb:term-gene-products mygohandle (godb:get-term-by-name mygohandle "killing of host cells"))
NIL

Exceptional Situations:

None.

See Also:

GO-ACCESSION-GENE-PRODUCTS

Notes:

The function first checks if each gene product is currently indexed. If it is, it's returned. Otherwise a new object is created and then indexed and returned.


News

News in chronological order, most recent on top.

  • 2005-06-14
    Completed description.